Showing results 1 through 21 (of 21 total) for all:epigenetics

1. arXiv:0904.4643 [pdf, other]

Title: Epigenetic Tracking: Towards a Project for an Artificial Biology

Authors: Alessandro Fontana

Comments: 16 pages, 19 figures

Subjects: Cell Behavior (q-bio.CB); Adaptation and Self-Organizing Systems (nlin.AO)

2. arXiv:0901.0180 [pdf, other]

Title: Epigenetic Landscape of Interacting Cells: A Model Simulation for Developmental Process

Authors: Motoki Nakagawa, Osamu Narikiyo

Subjects: Cell Behavior (q-bio.CB); Biological Physics (physics.bio-ph)

3. arXiv:0807.3064 [ps, pdf, other]

Title: Relationship among Phenotypic Plasticity, Genetic and Epigenetic Fluctuations, Robustness, and Evolovability; Waddington's Legacy revisited under the Spirit of Einstein

Authors: Kunihiko Kaneko

Comments: submitted to J BioScience

Subjects: Populations and Evolution (q-bio.PE); Statistical Mechanics (cond-mat.stat-mech); Adaptation and Self-Organizing Systems (nlin.AO)

4. arXiv:0807.1367 [ps, pdf, other]

Title: Shaping Robust System through Evolution

Authors: Kunihiko Kaneko

Journal-ref: Chaos (2008)18, 026112

Subjects: Populations and Evolution (q-bio.PE); Statistical Mechanics (cond-mat.stat-mech); Adaptation and Self-Organizing Systems (nlin.AO); Biological Physics (physics.bio-ph)

5. arXiv:0805.4017 [pdf, other]

Title: Extrinsic and intrinsic nucleosome positioning signals

Authors: Alexandre V. Morozov, Karissa Fortney, Daria A. Gaykalova, Vasily M. Studitsky, Jonathan Widom, Eric D. Siggia

Comments: 20 pages and 6 figures in main text, plus supporting information

Subjects: Genomics (q-bio.GN); Biomolecules (q-bio.BM)

6. arXiv:0805.2522 [pdf, other]

Title: Epigenetic Tracking, a Method to Generate Arbitrary Shapes By Using Evolutionary-Developmental Techniques

Authors: Alessandro Fontana

Comments: 12 pages, 11 figures

Subjects: Adaptation and Self-Organizing Systems (nlin.AO); Cell Behavior (q-bio.CB)

7. arXiv:0712.0973 [pdf, other]

Title: Nucleosome shape dictates chromatin-fiber structure

Authors: Martin Depken, Helmut Schiessel

Comments: 13 pages, 3 figures, 1 table, and supporting notes

Subjects: Other (q-bio.OT)

8. arXiv:0710.3889 [ps, pdf, other]

Title: Epigenetic Chromatin Silencing: Bistability and Front Propagation

Authors: Mohammad Sedighi, Anirvan M. Sengupta

Comments: 19 pages, 5 figures

Subjects: Molecular Networks (q-bio.MN)

9. arXiv:0709.0552 [pdf]

Title: Cancer Genesis and Progression as Dynamics in Functional Landscape of Endogenous Molecular-Cellular Network

Authors: P. Ao, D. Galas, L. Hood, X.-M. Zhu

Comments: 13 pages

Subjects: Subcellular Processes (q-bio.SC); Molecular Networks (q-bio.MN)

10. arXiv:0704.3957 [pdf]

Title: Erwin Schroedinger, Francis Crick and epigenetic stability

Authors: Vasily Ogryzko

Comments: New and improved version of the essay, now published in the online journal 'Biology Direct'. Contains more expanded discussion on entanglement. 18 pages, 2 figures. The file includes open reviews by E.Koonin, V.Vedral and E.Karsenti

Journal-ref: Biol Direct. 2008 Apr 17;3(1):15

Subjects: General Physics (physics.gen-ph); Molecular Networks (q-bio.MN)

11. arXiv:0704.2132 [pdf]

Title: A quantitative study on the growth variability of tumour cell clones in vitro

Authors: C. Tomelleri, E. Milotti, C. Dalla Pellegrina, O. Perbellini, A. Del Fabbro, M. T. Scupoli, R. Chignola

Comments: 31 pages, 5 figures

Subjects: Cell Behavior (q-bio.CB); Quantitative Methods (q-bio.QM)

12. arXiv:q-bio/0701011 [ps, pdf, other]

Title: A genetic circuit for epigenetic memory

Authors: Georg Fritz, Nicolas E. Buchler, Terence Hwa, Ulrich Gerland

Comments: 22 pages, 6 figures; supplementary material available upon request from the authors

Subjects: Molecular Networks (q-bio.MN)

13. arXiv:q-bio/0511038 [ps, pdf, other]

Title: Absolute Rate Theories of Epigenetic Stability

Authors: Aleksandra M. Walczak, José N. Onuchic, Peter G. Wolynes

Comments: 8 pages, 3 figures

Subjects: Molecular Networks (q-bio.MN)

14. arXiv:q-bio/0410002 [ps, pdf, other]

Title: Model of the early development of thalamo-cortical connections and area patterning via signaling molecules

Authors: Jan Karbowski, G.B. Ermentrout

Comments: brain, model, neural development, cortical area patterning, signaling molecules

Journal-ref: Journal of Computational Neuroscience 17: 347-363 (2004)

Subjects: Neurons and Cognition (q-bio.NC); Molecular Networks (q-bio.MN)

15. arXiv:q-bio/0406008 [ps, pdf, other]

Title: Optimal Path to Epigenetic Switching

Authors: David Marin Roma, Ruadhan A. O'Flanagan, Andrei E. Ruckenstein, Anirvan M. Sengupta, Ranjan Mukhopadhyay

Comments: 5 pages. 2 figures, uses revtex 4. PR-E reviewed for publication

Subjects: Molecular Networks (q-bio.MN); Cell Behavior (q-bio.CB)

16. arXiv:q-bio/0403005 [pdf]

Title: Calculating Biological Behaviors of Epigenetic States in Phage lambda Life Cycle

Authors: X.-M. Zhu, L. Yin, L. Hood, P. Ao

Comments: 16 pages, 3 figures, 1 table

Journal-ref: Functional and Integrative Genomics (2004)

Subjects: Molecular Networks (q-bio.MN); Quantitative Methods (q-bio.QM)

17. arXiv:cs/0206027 [pdf]

Title: Behaviour-based Knowledge Systems: An Epigenetic Path from Behaviour to Knowledge

Authors: Carlos Gershenson

Comments: 7 pages, 3 figures. To be published in Proceedings of 2nd Workshop on Epigenetic Robotics. Edinburgh, Aug. 10-11 2002

Subjects: Artificial Intelligence (cs.AI); Architecture (cs.AR); Neural and Evolutionary Computing (cs.NE)

18. arXiv:cond-mat/0110189 [pdf]

Title: Human Genome data analyzed by an evolutionary method suggests a decrease in cerebral protein-synthesis rate as cause of schizophrenia and an increase as antipsychotic mechanism

Authors: Hans W. M. Moises

Comments: 44 pages, 7 figures, changed title and corrected grammar. Part of the manuscript has been published in a modified form in BMC Psychiatry 2002 2:8

Subjects: Disordered Systems and Neural Networks (cond-mat.dis-nn); Soft Condensed Matter (cond-mat.soft); Quantitative Biology (q-bio)

19. arXiv:cond-mat/0103080 [ps, pdf, other]

Title: Epigenetics as a first exit problem

Authors: E. Aurell, K. Sneppen

Comments: 6 pages, 3 figures, in REVTeX

Subjects: Soft Condensed Matter (cond-mat.soft); Quantitative Biology (q-bio)

20. arXiv:cond-mat/0010286 [ps, pdf, other]

Title: Stability Puzzles in Phage Lambda

Authors: Erik Aurell, Stanley Brown, Johan Johanson, Kim Sneppen

Comments: LaTeX 24 pages, 7 figures in PostScript

Subjects: Soft Condensed Matter (cond-mat.soft); Statistical Mechanics (cond-mat.stat-mech); Quantitative Biology (q-bio)

21. arXiv:cond-mat/0003333 [ps, pdf, other]

Title: Robustness as an Evolutionary Principle

Authors: Stefan Bornholdt (Kiel University), Kim Sneppen (NORDITA)

Comments: 5 pages RevTeX, 4 figures PostScript, submitted to Proc R. Soc. London B

Journal-ref: Proc. R. Soc. Lond. B 267 (2000) 2281-2286

Subjects: Statistical Mechanics (cond-mat.stat-mech); Disordered Systems and Neural Networks (cond-mat.dis-nn); Adaptation and Self-Organizing Systems (nlin.AO); Biological Physics (physics.bio-ph); Molecular Networks (q-bio.MN)