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12/8/2009  ArXiv 090812

Showing results 1 through 21 (of 21 total) for all:epigenetics

1. arXiv:0904.4643 [pdf, other]
Title: Epigenetic Tracking: Towards a Project for an Artificial Biology
Comments: 16 pages, 19 figures
Subjects: Cell Behavior (q-bio.CB); Adaptation and Self-Organizing Systems (nlin.AO)
2. arXiv:0901.0180 [pdf, other]
Title: Epigenetic Landscape of Interacting Cells: A Model Simulation for Developmental Process
Subjects: Cell Behavior (q-bio.CB); Biological Physics (physics.bio-ph)
3. arXiv:0807.3064 [ps, pdf, other]
Title: Relationship among Phenotypic Plasticity, Genetic and Epigenetic Fluctuations, Robustness, and Evolovability; Waddington's Legacy revisited under the Spirit of Einstein
Authors: Kunihiko Kaneko
Comments: submitted to J BioScience
Subjects: Populations and Evolution (q-bio.PE); Statistical Mechanics (cond-mat.stat-mech); Adaptation and Self-Organizing Systems (nlin.AO)
4. arXiv:0807.1367 [ps, pdf, other]
Title: Shaping Robust System through Evolution
Authors: Kunihiko Kaneko
Journal-ref: Chaos (2008)18, 026112
Subjects: Populations and Evolution (q-bio.PE); Statistical Mechanics (cond-mat.stat-mech); Adaptation and Self-Organizing Systems (nlin.AO); Biological Physics (physics.bio-ph)
5. arXiv:0805.4017 [pdf, other]
Title: Extrinsic and intrinsic nucleosome positioning signals
Comments: 20 pages and 6 figures in main text, plus supporting information
Subjects: Genomics (q-bio.GN); Biomolecules (q-bio.BM)
6. arXiv:0805.2522 [pdf, other]
Title: Epigenetic Tracking, a Method to Generate Arbitrary Shapes By Using Evolutionary-Developmental Techniques
Comments: 12 pages, 11 figures
Subjects: Adaptation and Self-Organizing Systems (nlin.AO); Cell Behavior (q-bio.CB)
7. arXiv:0712.0973 [pdf, other]
Title: Nucleosome shape dictates chromatin-fiber structure
Comments: 13 pages, 3 figures, 1 table, and supporting notes
Subjects: Other (q-bio.OT)
8. arXiv:0710.3889 [ps, pdf, other]
Title: Epigenetic Chromatin Silencing: Bistability and Front Propagation
Comments: 19 pages, 5 figures
Subjects: Molecular Networks (q-bio.MN)
9. arXiv:0709.0552 [pdf]
Title: Cancer Genesis and Progression as Dynamics in Functional Landscape of Endogenous Molecular-Cellular Network
Comments: 13 pages
Subjects: Subcellular Processes (q-bio.SC); Molecular Networks (q-bio.MN)
10. arXiv:0704.3957 [pdf]
Title: Erwin Schroedinger, Francis Crick and epigenetic stability
Authors: Vasily Ogryzko
Comments: New and improved version of the essay, now published in the online journal 'Biology Direct'. Contains more expanded discussion on entanglement. 18 pages, 2 figures. The file includes open reviews by E.Koonin, V.Vedral and E.Karsenti
Journal-ref: Biol Direct. 2008 Apr 17;3(1):15
Subjects: General Physics (physics.gen-ph); Molecular Networks (q-bio.MN)
11. arXiv:0704.2132 [pdf]
Title: A quantitative study on the growth variability of tumour cell clones in vitro
Comments: 31 pages, 5 figures
Subjects: Cell Behavior (q-bio.CB); Quantitative Methods (q-bio.QM)
12. arXiv:q-bio/0701011 [ps, pdf, other]
Title: A genetic circuit for epigenetic memory
Comments: 22 pages, 6 figures; supplementary material available upon request from the authors
Subjects: Molecular Networks (q-bio.MN)
13. arXiv:q-bio/0511038 [ps, pdf, other]
Title: Absolute Rate Theories of Epigenetic Stability
Comments: 8 pages, 3 figures
Subjects: Molecular Networks (q-bio.MN)
14. arXiv:q-bio/0410002 [ps, pdf, other]
Title: Model of the early development of thalamo-cortical connections and area patterning via signaling molecules
Comments: brain, model, neural development, cortical area patterning, signaling molecules
Journal-ref: Journal of Computational Neuroscience 17: 347-363 (2004)
Subjects: Neurons and Cognition (q-bio.NC); Molecular Networks (q-bio.MN)
15. arXiv:q-bio/0406008 [ps, pdf, other]
Title: Optimal Path to Epigenetic Switching
Comments: 5 pages. 2 figures, uses revtex 4. PR-E reviewed for publication
Subjects: Molecular Networks (q-bio.MN); Cell Behavior (q-bio.CB)
16. arXiv:q-bio/0403005 [pdf]
Title: Calculating Biological Behaviors of Epigenetic States in Phage lambda Life Cycle
Comments: 16 pages, 3 figures, 1 table
Journal-ref: Functional and Integrative Genomics (2004)
Subjects: Molecular Networks (q-bio.MN); Quantitative Methods (q-bio.QM)
17. arXiv:cs/0206027 [pdf]
Title: Behaviour-based Knowledge Systems: An Epigenetic Path from Behaviour to Knowledge
Comments: 7 pages, 3 figures. To be published in Proceedings of 2nd Workshop on Epigenetic Robotics. Edinburgh, Aug. 10-11 2002
Subjects: Artificial Intelligence (cs.AI); Architecture (cs.AR); Neural and Evolutionary Computing (cs.NE)
18. arXiv:cond-mat/0110189 [pdf]
Title: Human Genome data analyzed by an evolutionary method suggests a decrease in cerebral protein-synthesis rate as cause of schizophrenia and an increase as antipsychotic mechanism
Comments: 44 pages, 7 figures, changed title and corrected grammar. Part of the manuscript has been published in a modified form in BMC Psychiatry 2002 2:8
Subjects: Disordered Systems and Neural Networks (cond-mat.dis-nn); Soft Condensed Matter (cond-mat.soft); Quantitative Biology (q-bio)
19. arXiv:cond-mat/0103080 [ps, pdf, other]
Title: Epigenetics as a first exit problem
Comments: 6 pages, 3 figures, in REVTeX
Subjects: Soft Condensed Matter (cond-mat.soft); Quantitative Biology (q-bio)
20. arXiv:cond-mat/0010286 [ps, pdf, other]
Title: Stability Puzzles in Phage Lambda
Comments: LaTeX 24 pages, 7 figures in PostScript
Subjects: Soft Condensed Matter (cond-mat.soft); Statistical Mechanics (cond-mat.stat-mech); Quantitative Biology (q-bio)
21. arXiv:cond-mat/0003333 [ps, pdf, other]
Title: Robustness as an Evolutionary Principle
Authors: Stefan Bornholdt (Kiel University), Kim Sneppen (NORDITA)
Comments: 5 pages RevTeX, 4 figures PostScript, submitted to Proc R. Soc. London B
Journal-ref: Proc. R. Soc. Lond. B 267 (2000) 2281-2286
Subjects: Statistical Mechanics (cond-mat.stat-mech); Disordered Systems and Neural Networks (cond-mat.dis-nn); Adaptation and Self-Organizing Systems (nlin.AO); Biological Physics (physics.bio-ph); Molecular Networks (q-bio.MN)

 
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