21/4/2013 Showing results 1 through 54 (of 54 total) for all:epigenetics- 1. arXiv:1304.4799 [pdf, ps, other]
Robust partial likelihood approach for detecting imprinting and maternal effects using case-control families Journal-ref: Annals of Applied Statistics 2013, Vol. 7, No. 1, 249-268 Subjects: Applications (stat.AP) - 2. arXiv:1304.3381 [pdf]
Life Before Earth Comments: 26 pages, 3 figures Subjects: General Physics (physics.gen-ph) - 3. arXiv:1304.2174 [pdf, other]
Epigenetic Tracking: a Model for Multicellular Biology Comments: 33 pages, 16 figures. arXiv admin note: substantial text overlap with arXiv:1012.2276 Subjects: Cell Behavior (q-bio.CB); Populations and Evolution (q-bio.PE) - 4. arXiv:1302.7276 [pdf]
Role of genetic polymorphisms in transgenerational inheritance of inherent as well as acquired traits in budding yeast Comments: 5 pages, 3 figures Subjects: Genomics (q-bio.GN); Populations and Evolution (q-bio.PE) - 5. arXiv:1211.6664 [pdf]
Compression of structured high-throughput sequencing data Comments: main article: 2 figures, 2 tables. Supplementary material: 2 figures, 4 tables. Comment on this manuscript on Twitter or Google Plus using handle #Goby2Paper Subjects: Quantitative Methods (q-bio.QM); Databases (cs.DB); Genomics (q-bio.GN) - 6. arXiv:1211.4263 [pdf, ps, other]
Mathematical framework of epigenetic DNA methylation in gene body Arabidopsis Comments: 23 pp, 5 figures, Appendix file Subjects: Quantitative Methods (q-bio.QM); Molecular Networks (q-bio.MN) - 7. arXiv:1211.3133 [pdf, other]
Epigenetic landscapes explain partially reprogrammed cells and identify key reprogramming genes Comments: 19 pages with Supplementary Information, 10 Figures, 4 Data Files. v2 correctly attaches Data Files, no paper changes. v3 only change in Data File TF_Reprogramming_Candidates.xls so that Overexpression / Knockout were in separate lists Subjects: Molecular Networks (q-bio.MN); Disordered Systems and Neural Networks (cond-mat.dis-nn); Statistical Mechanics (cond-mat.stat-mech) - 8. arXiv:1210.1237 [pdf, other]
Multisite Population Epigenetic Model of Passive Demethylation Subjects: Populations and Evolution (q-bio.PE) - 9. arXiv:1209.4967 [pdf]
Comparative Analysis of Tandem Repeats from Hundreds of Species Reveals Unique Insights into Centromere Evolution Daniël P. Melters, Keith R. Bradnam, Hugh A. Young, Natalie Telis, Michael R. May, J. Graham Ruby, Robert Sebra, Paul Peluso, John Eid, David Rank, José Fernando Garcia, Joseph L. DeRisi, Timothy Smith, Christian Tobias, Jeffrey Ross-Ibarra, Ian F. Korf, Simon W.-L. Chan Journal-ref: Genome Biology 2013 Subjects: Genomics (q-bio.GN) - 10. arXiv:1209.4603 [pdf]
Global Epigenetic State Network Governs Cellular Pluripotent Reprogramming and Transdifferentiation Comments: 18 pages,4 figures, 2 tables Subjects: Molecular Networks (q-bio.MN) - 11. arXiv:1209.3802 [pdf, other]
Titration and hysteresis in epigenetic chromatin silencing Subjects: Molecular Networks (q-bio.MN) - 12. arXiv:1207.3624 [pdf, other]
How to Grow an Organism Inside-Out: Evolution of an internal skeleton from an external skeleton in bilateral organisms Comments: 9 pages. Key Words: Metazoan evolution, inside-out growth, inside-out development, internal skeleton, external skeleton, exoskeleton, bilateral symmetry, developmental control networks, embryo genesis, cell orientation, Cambrian Explosion Subjects: Tissues and Organs (q-bio.TO); Molecular Networks (q-bio.MN); Subcellular Processes (q-bio.SC) - 13. arXiv:1207.3289 [pdf, other]
The Origin, Evolution and Development of Bilateral Symmetry in Multicellular Organisms Comments: 29 pages Subjects: Tissues and Organs (q-bio.TO); Computational Engineering, Finance, and Science (cs.CE) - 14. arXiv:1207.2728 [pdf, other]
The Influence of Decoys on the Noise and Dynamics of Gene Expression Comments: 8 pages, 4 figures Subjects: Molecular Networks (q-bio.MN) - 15. arXiv:1205.2571 [pdf, ps, other]
The role of multiple marks in epigenetic silencing and the emergence of a stable bivalent chromatin state Comments: Supplementary Material, 14 pages Subjects: Molecular Networks (q-bio.MN); Quantitative Methods (q-bio.QM) - 16. arXiv:1203.3954 [pdf]
Gender differences in time perception and its relation with academic performance: non-linear dynamics in the formation of cognitive systems Comments: Politically incorrect paper practically impossible to publish in a psychology journal Subjects: Neurons and Cognition (q-bio.NC) - 17. arXiv:1201.0921 [pdf]
Nucleosomes in gene regulation: theoretical approaches Journal-ref: Molecular Biology, 2012, Vol. 46, No. 1, pp. 1--10 Subjects: Genomics (q-bio.GN); Statistical Mechanics (cond-mat.stat-mech); Biological Physics (physics.bio-ph) - 18. arXiv:1112.2095 [pdf, other]
Real-time face swapping as a tool for understanding infant self-recognition Journal-ref: International Conference on Epigenetic Robotics, Glumslov : Sweden (2010) Subjects: Artificial Intelligence (cs.AI); Computer Vision and Pattern Recognition (cs.CV) - 19. arXiv:1106.3005 [pdf, other]
Spatial structure increases the waiting time for cancer Comments: 21 pages Journal-ref: New Journal of Physics 13, 115014 (2011) Subjects: Populations and Evolution (q-bio.PE); Adaptation and Self-Organizing Systems (nlin.AO) - 20. arXiv:1101.4984 [pdf, ps, other]
Rate distortion coevolutionary dynamics and the flow nature of cognitive epigenetic systems Comments: 22 pages Subjects: Other Quantitative Biology (q-bio.OT) - 21. arXiv:1101.3251 [pdf]
Timing is everything: on the stochastic origins of cell-to-cell variability in cancer cell death decisions Comments: 18 pages, 5 figures Journal-ref: Frontiers in Bioscience 16:307-14, 2011 Subjects: Cell Behavior (q-bio.CB); Molecular Networks (q-bio.MN) - 22. arXiv:1012.2276 [pdf, other]
Epigenetic Tracking: a model for all biology Comments: 42 pages, 23 figures Subjects: Adaptation and Self-Organizing Systems (nlin.AO); Quantitative Methods (q-bio.QM) - 23. arXiv:1011.2025 [pdf, ps, other]
Statistical inference of transmission fidelity of DNA methylation patterns over somatic cell divisions in mammals Journal-ref: Annals of Applied Statistics 2010, Vol. 4, No. 2, 871-892 Subjects: Applications (stat.AP); Genomics (q-bio.GN); Quantitative Methods (q-bio.QM) - 24. arXiv:1010.3268 [pdf, other]
Mapping Dynamic Histone Acetylation Patterns to Gene Expression in Nanog-depleted Murine Embryonic Stem Cells Comments: accepted at PLoS Computational Biology Journal-ref: PLoS Comp Bio, 2010 Dec 16;6(12):e1001034 Subjects: Genomics (q-bio.GN) - 25. arXiv:1006.4642 [pdf]
Presymptomatic risk assessment for chronic non-communicable diseases Comments: Plos ONE paper. Previous version was withdrawn to be updated by the journal's pdf version Journal-ref: 2010 PLoS ONE 5(12): e14338. doi:10.1371/journal.pone.0014338 Subjects: Genomics (q-bio.GN); Quantitative Methods (q-bio.QM); Applications (stat.AP); Methodology (stat.ME) - 26. arXiv:1005.4896 [pdf, other]
A hypothesis on the role of transposons Comments: 8 pages, 9 figures Subjects: Adaptation and Self-Organizing Systems (nlin.AO) - 27. arXiv:1004.3162 [pdf]
Consequences of cell-to-cell P-glycoprotein transfer on acquired multidrug resistance in breast cancer: a cell population dynamics model Comments: 13 pages, 8 figures, 1 table Subjects: Biomolecules (q-bio.BM) - 28. arXiv:1003.1927 [pdf, ps, other]
Evolutionary dynamics of tumor progression with random fitness values Comments: 33 pages, 2 Figures Journal-ref: Theoretical Population Biology, Volume 78, Issue 1, August 2010, Pages 54-66 Subjects: Probability (math.PR); Tissues and Organs (q-bio.TO) - 29. arXiv:1002.1600 [pdf, ps, other]
Theory for stability and regulation of epigenetic landscapes Comments: references added Journal-ref: Phys. Biol. 7, 026010 (2010) Subjects: Molecular Networks (q-bio.MN) - 30. arXiv:1001.4972 [pdf, ps, other]
Higher Order Boolean networks as models of cell state dynamics Comments: 26 pages, 5 figures Subjects: Molecular Networks (q-bio.MN) - 31. arXiv:1001.4246 [pdf, other]
Topological interactions between ring polymers: Implications for chromatin loops Comments: 12 pages, 11 figures. The article has been accepted by The Journal Of Chemical Physics. After it is published, it will be found at this http URL Subjects: Soft Condensed Matter (cond-mat.soft); Statistical Mechanics (cond-mat.stat-mech); Chemical Physics (physics.chem-ph); Biomolecules (q-bio.BM) - 32. arXiv:1001.2810 [pdf, other]
Epigenetic Tracking: Implementation Details Comments: 26 pages, 20 figures Subjects: Adaptation and Self-Organizing Systems (nlin.AO); Cell Behavior (q-bio.CB) - 33. arXiv:0912.4465 [pdf, other]
A quantum spin approach to histone dynamics Comments: 12 pages, 6 figures Subjects: Molecular Networks (q-bio.MN); Biomolecules (q-bio.BM) - 34. arXiv:0912.4102 [pdf]
Scale-free dynamics of somatic adaptability in immune system Comments: 14 pages, 8 figures Subjects: Biological Physics (physics.bio-ph); Cell Behavior (q-bio.CB)
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