Showing results 1 through 54 (of 54 total) for all:epigenetics

1. arXiv:1304.4799 [pdfpsother]
Robust partial likelihood approach for detecting imprinting and maternal effects using case-control families
Comments: Published in at this http URL the Annals of Applied Statistics (this http URL) by the Institute of Mathematical Statistics (this http URL)
Journal-ref: Annals of Applied Statistics 2013, Vol. 7, No. 1, 249-268
Subjects: Applications (stat.AP)
2. arXiv:1304.3381 [pdf]
Life Before Earth
Comments: 26 pages, 3 figures
Subjects: General Physics (physics.gen-ph)
3. arXiv:1304.2174 [pdfother]
Epigenetic Tracking: a Model for Multicellular Biology
Comments: 33 pages, 16 figures. arXiv admin note: substantial text overlap with arXiv:1012.2276
Subjects: Cell Behavior (q-bio.CB); Populations and Evolution (q-bio.PE)
4. arXiv:1302.7276 [pdf]
Role of genetic polymorphisms in transgenerational inheritance of inherent as well as acquired traits in budding yeast
Comments: 5 pages, 3 figures
Subjects: Genomics (q-bio.GN); Populations and Evolution (q-bio.PE)
5. arXiv:1211.6664 [pdf]
Compression of structured high-throughput sequencing data
Comments: main article: 2 figures, 2 tables. Supplementary material: 2 figures, 4 tables. Comment on this manuscript on Twitter or Google Plus using handle #Goby2Paper
Subjects: Quantitative Methods (q-bio.QM); Databases (cs.DB); Genomics (q-bio.GN)
6. arXiv:1211.4263 [pdfpsother]
Mathematical framework of epigenetic DNA methylation in gene body Arabidopsis
Comments: 23 pp, 5 figures, Appendix file
Subjects: Quantitative Methods (q-bio.QM); Molecular Networks (q-bio.MN)
7. arXiv:1211.3133 [pdfother]
Epigenetic landscapes explain partially reprogrammed cells and identify key reprogramming genes
Comments: 19 pages with Supplementary Information, 10 Figures, 4 Data Files. v2 correctly attaches Data Files, no paper changes. v3 only change in Data File TF_Reprogramming_Candidates.xls so that Overexpression / Knockout were in separate lists
Subjects: Molecular Networks (q-bio.MN); Disordered Systems and Neural Networks (cond-mat.dis-nn); Statistical Mechanics (cond-mat.stat-mech)
8. arXiv:1210.1237 [pdfother]
Multisite Population Epigenetic Model of Passive Demethylation
Subjects: Populations and Evolution (q-bio.PE)
9. arXiv:1209.4967 [pdf]
Comparative Analysis of Tandem Repeats from Hundreds of Species Reveals Unique Insights into Centromere Evolution
Journal-ref: Genome Biology 2013
Subjects: Genomics (q-bio.GN)
10. arXiv:1209.4603 [pdf]
Global Epigenetic State Network Governs Cellular Pluripotent Reprogramming and Transdifferentiation
Comments: 18 pages,4 figures, 2 tables
Subjects: Molecular Networks (q-bio.MN)
11. arXiv:1209.3802 [pdfother]
Titration and hysteresis in epigenetic chromatin silencing
Subjects: Molecular Networks (q-bio.MN)
12. arXiv:1207.3624 [pdfother]
How to Grow an Organism Inside-Out: Evolution of an internal skeleton from an external skeleton in bilateral organisms
Comments: 9 pages. Key Words: Metazoan evolution, inside-out growth, inside-out development, internal skeleton, external skeleton, exoskeleton, bilateral symmetry, developmental control networks, embryo genesis, cell orientation, Cambrian Explosion
Subjects: Tissues and Organs (q-bio.TO); Molecular Networks (q-bio.MN); Subcellular Processes (q-bio.SC)
13. arXiv:1207.3289 [pdfother]
The Origin, Evolution and Development of Bilateral Symmetry in Multicellular Organisms
Comments: 29 pages
Subjects: Tissues and Organs (q-bio.TO); Computational Engineering, Finance, and Science (cs.CE)
14. arXiv:1207.2728 [pdfother]
The Influence of Decoys on the Noise and Dynamics of Gene Expression
Comments: 8 pages, 4 figures
Subjects: Molecular Networks (q-bio.MN)
15. arXiv:1205.2571 [pdfpsother]
The role of multiple marks in epigenetic silencing and the emergence of a stable bivalent chromatin state
Comments: Supplementary Material, 14 pages
Subjects: Molecular Networks (q-bio.MN); Quantitative Methods (q-bio.QM)
16. arXiv:1203.3954 [pdf]
Gender differences in time perception and its relation with academic performance: non-linear dynamics in the formation of cognitive systems
Comments: Politically incorrect paper practically impossible to publish in a psychology journal
Subjects: Neurons and Cognition (q-bio.NC)
17. arXiv:1201.0921 [pdf]
Nucleosomes in gene regulation: theoretical approaches
Journal-ref: Molecular Biology, 2012, Vol. 46, No. 1, pp. 1--10
Subjects: Genomics (q-bio.GN); Statistical Mechanics (cond-mat.stat-mech); Biological Physics (physics.bio-ph)
18. arXiv:1112.2095 [pdfother]
Real-time face swapping as a tool for understanding infant self-recognition
Sao Mai Nguyen (INRIA Bordeaux - Sud-Ouest), Masaki OginoMinoru Asada
Journal-ref: International Conference on Epigenetic Robotics, Glumslov : Sweden (2010)
Subjects: Artificial Intelligence (cs.AI); Computer Vision and Pattern Recognition (cs.CV)
19. arXiv:1106.3005 [pdfother]
Spatial structure increases the waiting time for cancer
Comments: 21 pages
Journal-ref: New Journal of Physics 13, 115014 (2011)
Subjects: Populations and Evolution (q-bio.PE); Adaptation and Self-Organizing Systems (nlin.AO)
20. arXiv:1101.4984 [pdfpsother]
Rate distortion coevolutionary dynamics and the flow nature of cognitive epigenetic systems
Comments: 22 pages
Subjects: Other Quantitative Biology (q-bio.OT)
21. arXiv:1101.3251 [pdf]
Timing is everything: on the stochastic origins of cell-to-cell variability in cancer cell death decisions
Comments: 18 pages, 5 figures
Journal-ref: Frontiers in Bioscience 16:307-14, 2011
Subjects: Cell Behavior (q-bio.CB); Molecular Networks (q-bio.MN)
22. arXiv:1012.2276 [pdfother]
Epigenetic Tracking: a model for all biology
Comments: 42 pages, 23 figures
Subjects: Adaptation and Self-Organizing Systems (nlin.AO); Quantitative Methods (q-bio.QM)
23. arXiv:1011.2025 [pdfpsother]
Statistical inference of transmission fidelity of DNA methylation patterns over somatic cell divisions in mammals
Comments: Published in at this http URL the Annals of Applied Statistics (this http URL) by the Institute of Mathematical Statistics (this http URL)
Journal-ref: Annals of Applied Statistics 2010, Vol. 4, No. 2, 871-892
Subjects: Applications (stat.AP); Genomics (q-bio.GN); Quantitative Methods (q-bio.QM)
24. arXiv:1010.3268 [pdfother]
Mapping Dynamic Histone Acetylation Patterns to Gene Expression in Nanog-depleted Murine Embryonic Stem Cells
Comments: accepted at PLoS Computational Biology
Journal-ref: PLoS Comp Bio, 2010 Dec 16;6(12):e1001034
Subjects: Genomics (q-bio.GN)
25. arXiv:1006.4642 [pdf]
Presymptomatic risk assessment for chronic non-communicable diseases
Comments: Plos ONE paper. Previous version was withdrawn to be updated by the journal's pdf version
Journal-ref: 2010 PLoS ONE 5(12): e14338. doi:10.1371/journal.pone.0014338
Subjects: Genomics (q-bio.GN); Quantitative Methods (q-bio.QM); Applications (stat.AP); Methodology (stat.ME)
26. arXiv:1005.4896 [pdfother]
A hypothesis on the role of transposons
Comments: 8 pages, 9 figures
Subjects: Adaptation and Self-Organizing Systems (nlin.AO)
27. arXiv:1004.3162 [pdf]
Consequences of cell-to-cell P-glycoprotein transfer on acquired multidrug resistance in breast cancer: a cell population dynamics model
Comments: 13 pages, 8 figures, 1 table
Subjects: Biomolecules (q-bio.BM)
28. arXiv:1003.1927 [pdfpsother]
Evolutionary dynamics of tumor progression with random fitness values
Comments: 33 pages, 2 Figures
Journal-ref: Theoretical Population Biology, Volume 78, Issue 1, August 2010, Pages 54-66
Subjects: Probability (math.PR); Tissues and Organs (q-bio.TO)
29. arXiv:1002.1600 [pdfpsother]
Theory for stability and regulation of epigenetic landscapes
Comments: references added
Journal-ref: Phys. Biol. 7, 026010 (2010)
Subjects: Molecular Networks (q-bio.MN)
30. arXiv:1001.4972 [pdfpsother]
Higher Order Boolean networks as models of cell state dynamics
Comments: 26 pages, 5 figures
Subjects: Molecular Networks (q-bio.MN)
31. arXiv:1001.4246 [pdfother]
Topological interactions between ring polymers: Implications for chromatin loops
Comments: 12 pages, 11 figures. The article has been accepted by The Journal Of Chemical Physics. After it is published, it will be found at this http URL
Subjects: Soft Condensed Matter (cond-mat.soft); Statistical Mechanics (cond-mat.stat-mech); Chemical Physics (physics.chem-ph); Biomolecules (q-bio.BM)
32. arXiv:1001.2810 [pdfother]
Epigenetic Tracking: Implementation Details
Comments: 26 pages, 20 figures
Subjects: Adaptation and Self-Organizing Systems (nlin.AO); Cell Behavior (q-bio.CB)
33. arXiv:0912.4465 [pdfother]
A quantum spin approach to histone dynamics
Comments: 12 pages, 6 figures
Subjects: Molecular Networks (q-bio.MN); Biomolecules (q-bio.BM)
34. arXiv:0912.4102 [pdf]
Scale-free dynamics of somatic adaptability in immune system
Comments: 14 pages, 8 figures
Subjects: Biological Physics (physics.bio-ph); Cell Behavior (q-bio.CB)